Here, we will provide an overview of our lab equipment (in vitro), bioinformatical resources (in silico), and field resources (in situ)!
in vitro
Sequencer
- PromethION 2 Solo (P2 Solo; Oxford Nanopore Technologies)
- MinION Mk1C (Oxford Nanopore Technologies)
- MinION Mk1B (Oxford Nanopore Technologies)
Further Laboratory Equipment
- KingFisher Apex Purification System (Thermo Fisher Scientific™)
- VICTOR® Nivo™ Multimode Microplate Reader (PerkinElmer)
- 4150 TapeStation (Agilent)
- Bioanalyzer (Agilent)
- Qubit Fluorometer 2.0 (Thermo Fisher Scientific™)
- Thermocycler
- Gel electrophoresis
- Miniturised Lab Equipment for Field Work (da Silva et al., 2024)
Laboratories
- Molecular Ecology Lab
- basic laboratory equipment for molecular genetics
- Clean Lab
- for low-quality or historical samples (<100 years old)
- for environmental DNA (eDNA)
- Ancient DNA Lab
- for ancient and sensitive samples, e.g., from archaeological excavations
in silico
Our GitHub page hosts repositories containing code pipelines, bioinformatics scripts, protocols, guidelines, and other resources. Please note: We’re still building and refining the page—more repositories will be added over time!
Supercomputers & Object Storage
- Puhti (CSC – IT Center for Science, Finland)
- Mahti (CSC – IT Center for Science, Finland)
- Allas (CSC – IT Center for Science, Finland)
in situ
Helpful content like sampling guides will be provided soon!
